Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000294.1 Corchorus olitorius cultivar O-4 contig00294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 690

Length: 1151
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:741 original size:25 final size:25

Alignment explanation


    Indices: 707--761  Score: 92
    Period size: 25  Copynumber: 2.2  Consensus size: 25

        697 CTCACCCACT

                 *        *          
        707 AATCCGAAACACATGATCCAAGTTG
          1 AATCCAAAACACATAATCCAAGTTG

                                     
        732 AATCCAAAACACATAATCCAAGTTG
          1 AATCCAAAACACATAATCCAAGTTG

                 
        757 AATCC
          1 AATCC

        762 GAATTAATCA


Statistics
Matches: 28,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  25   28  1.00

ACGTcount: A:0.44, C:0.25, G:0.11, T:0.20


Consensus pattern (25 bp):   
AATCCAAAACACATAATCCAAGTTG
Done.