Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002943.1 Corchorus olitorius cultivar O-4 contig02948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 602

Length: 1004
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.33


Found at i:933 original size:21 final size:21

Alignment explanation


    Indices: 907--957  Score: 75
    Period size: 21  Copynumber: 2.4  Consensus size: 21

        897 TCACTTCCTT

                             *   
        907 TCTTTTTGTCCAAGTTATTTC
          1 TCTTTTTGTCCAAGTTACTTC

                   *        *    
        928 TCTTTTTATCCAAGTTGCTTC
          1 TCTTTTTGTCCAAGTTACTTC

                     
        949 TCTTTTTGT
          1 TCTTTTTGT

        958 TTAAATTCTT


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  21   26  1.00

ACGTcount: A:0.12, C:0.20, G:0.10, T:0.59


Consensus pattern (21 bp):   
TCTTTTTGTCCAAGTTACTTC

Found at i:969 original size:15 final size:15

Alignment explanation


    Indices: 949--978  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        939 AAGTTGCTTC

                     *     
        949 TCTTTTTGTTTAAAT
          1 TCTTTTTGTCTAAAT

                           
        964 TCTTTTTGTCTAAAT
          1 TCTTTTTGTCTAAAT

        979 CACTTCCTTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.20, C:0.10, G:0.07, T:0.63


Consensus pattern (15 bp):   
TCTTTTTGTCTAAAT
Done.