Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002992.1 Corchorus olitorius cultivar O-4 contig02997, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 666

Length: 1110
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24


Found at i:771 original size:31 final size:31

Alignment explanation


    Indices: 736--795  Score: 111
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        726 CATCTATTTT

                                           
        736 CATTGTTCAACTCTTTGACAACACGAAAACC
          1 CATTGTTCAACTCTTTGACAACACGAAAACC

                                   *     
        767 CATTGTTCAACTCTTTGACAACATGAAAA
          1 CATTGTTCAACTCTTTGACAACACGAAAA

        796 AACCAAAAGC


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   28  1.00

ACGTcount: A:0.37, C:0.25, G:0.10, T:0.28


Consensus pattern (31 bp):   
CATTGTTCAACTCTTTGACAACACGAAAACC
Done.