Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000030.1 Corchorus olitorius cultivar O-4 contig00030, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 632

Length: 1054
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.39


Found at i:869 original size:20 final size:20

Alignment explanation


    Indices: 821--860  Score: 71
    Period size: 20  Copynumber: 2.0  Consensus size: 20

        811 GAATTTGACA

                 *              
        821 AATCTATCTTCTCTCCGTCG
          1 AATCTCTCTTCTCTCCGTCG

                                
        841 AATCTCTCTTCTCTCCGTCG
          1 AATCTCTCTTCTCTCCGTCG

        861 CTTTTCTCTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.12, C:0.38, G:0.10, T:0.40


Consensus pattern (20 bp):   
AATCTCTCTTCTCTCCGTCG
Done.