Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003002.1 Corchorus olitorius cultivar O-4 contig03007, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2457
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18


Found at i:2425 original size:27 final size:27

Alignment explanation


    Indices: 2381--2433  Score: 63
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       2371 AATGCGCTCT

                       * *              
       2381 GCCGCCTCCAGCTGCGCCCA-CAGATAC
          1 GCCGCCTCCAGATCCG-CCATCAGATAC

                   *                  
       2408 GCCGCCTGCAGATCCGCCATCAGATA
          1 GCCGCCTCCAGATCCGCCATCAGATA

       2434 GCTTGAGCCA


Statistics
Matches: 22,  Mismatches: 3, Indels: 2
        0.81            0.11        0.07

Matches are distributed among these distances:
  26    3  0.14
  27   19  0.86

ACGTcount: A:0.21, C:0.43, G:0.23, T:0.13


Consensus pattern (27 bp):   
GCCGCCTCCAGATCCGCCATCAGATAC
Done.