Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003005.1 Corchorus olitorius cultivar O-4 contig03010, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1208
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27


Found at i:909 original size:21 final size:21

Alignment explanation


    Indices: 883--952  Score: 74
    Period size: 21  Copynumber: 3.3  Consensus size: 21

        873 AGGGGTCCGC

                                 
        883 ATAAGCTATAACAAGTAAAAT
          1 ATAAGCTATAACAAGTAAAAT

                              * *  
        904 ATAAGCTAT-ACAGAGATCACA-
          1 ATAAGCTATAACA-AG-TAAAAT

                                  
        925 ATAAGCTATAGA-AAGTAAAAT
          1 ATAAGCTATA-ACAAGTAAAAT

                   
        946 ATAAGCT
          1 ATAAGCT

        953 GTAATTAGGA


Statistics
Matches: 40,  Mismatches: 4, Indels: 10
        0.74            0.07        0.19

Matches are distributed among these distances:
  20    6  0.15
  21   29  0.73
  22    4  0.10
  23    1  0.03

ACGTcount: A:0.53, C:0.11, G:0.13, T:0.23


Consensus pattern (21 bp):   
ATAAGCTATAACAAGTAAAAT
Done.