Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003011.1 Corchorus olitorius cultivar O-4 contig03016, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2354
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.30


Found at i:836 original size:24 final size:26

Alignment explanation


    Indices: 788--842  Score: 69
    Period size: 25  Copynumber: 2.2  Consensus size: 26

        778 CAATAACTCT

                        *    *  *     
        788 CAATCAATCTCTCAACCCAATCT-AA
          1 CAATCAATCTCTAAACCAAACCTAAA

                                      
        813 CAATCAAT-TCTAAACCAAACCTAAA
          1 CAATCAATCTCTAAACCAAACCTAAA

                 
        838 CAATC
          1 CAATC

        843 TTGAGCACTC


Statistics
Matches: 26,  Mismatches: 3, Indels: 2
        0.84            0.10        0.06

Matches are distributed among these distances:
  24   11  0.42
  25   15  0.58

ACGTcount: A:0.45, C:0.33, G:0.00, T:0.22


Consensus pattern (26 bp):   
CAATCAATCTCTAAACCAAACCTAAA
Done.