Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003022.1 Corchorus olitorius cultivar O-4 contig03027, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2382
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18


Found at i:2347 original size:21 final size:20

Alignment explanation


    Indices: 2321--2360  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       2311 CCCAAGGCAG

                                 
       2321 CGCACCCGCAGCCGCGCCCGC
          1 CGCACCCGCAGCCGC-CCCGC

                  *  *         
       2342 CGCACCTGCTGCCGCCCCG
          1 CGCACCCGCAGCCGCCCCG

       2361 GCAGCCAAGA


Statistics
Matches: 17,  Mismatches: 2, Indels: 1
        0.85            0.10        0.05

Matches are distributed among these distances:
  20    4  0.24
  21   13  0.76

ACGTcount: A:0.07, C:0.60, G:0.28, T:0.05


Consensus pattern (20 bp):   
CGCACCCGCAGCCGCCCCGC
Done.