Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000305.1 Corchorus olitorius cultivar O-4 contig00305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2405
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31


Found at i:414 original size:6 final size:6

Alignment explanation


    Indices: 376--423  Score: 55
    Period size: 6  Copynumber: 8.2  Consensus size: 6

        366 TATAATAGTA

                                          * *                       
        376 AGATAT AGTATAT AG-TAT AGAT-T ACAGAT AGATAT AGATAT AGATAT
          1 AGATAT AG-ATAT AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT

             
        423 A
          1 A

        424 TATAATTTTA


Statistics
Matches: 35,  Mismatches: 4, Indels: 6
        0.78            0.09        0.13

Matches are distributed among these distances:
   5    8  0.23
   6   21  0.60
   7    6  0.17

ACGTcount: A:0.48, C:0.02, G:0.17, T:0.33


Consensus pattern (6 bp):   
AGATAT

Done.