Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003060.1 Corchorus olitorius cultivar O-4 contig03065, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1633
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34


Found at i:1332 original size:15 final size:15

Alignment explanation


    Indices: 1312--1341  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1302 AATTAATTAA

                      *    
       1312 TTCAAACAAACATTT
          1 TTCAAACAAAAATTT

                           
       1327 TTCAAACAAAAATTT
          1 TTCAAACAAAAATTT

       1342 GCATTTTTTT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33


Consensus pattern (15 bp):   
TTCAAACAAAAATTT
Done.