Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003066.1 Corchorus olitorius cultivar O-4 contig03071, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 787

Length: 1313
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29


Found at i:1119 original size:72 final size:73

Alignment explanation


    Indices: 999--1141  Score: 252
    Period size: 72  Copynumber: 2.0  Consensus size: 73

        989 AATCAGATGC

                                                                    *        
        999 CAGGAACCAGATTTGAACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGAGCTATC
          1 CAGGAACCAGATTTGAACTGGT-ACACGAGGATTTTCAGTCCTCTGCTCTACCAACCGAGCTATC

                     
       1064 CCGACCGTT
         65 CCGACCGTT

                                     *                                       
       1073 CAGGAACCAGATTTGAACTGGT-CATGAGGATTTTCAGTCCTCTGCTCTACCAACCGAGCTATCC
          1 CAGGAACCAGATTTGAACTGGTACACGAGGATTTTCAGTCCTCTGCTCTACCAACCGAGCTATCC

                 
       1137 CGACC
         66 CGACC

       1142 ATTACCGACG


Statistics
Matches: 67,  Mismatches: 2, Indels: 2
        0.94            0.03        0.03

Matches are distributed among these distances:
  72   45  0.67
  74   22  0.33

ACGTcount: A:0.24, C:0.29, G:0.21, T:0.25


Consensus pattern (73 bp):   
CAGGAACCAGATTTGAACTGGTACACGAGGATTTTCAGTCCTCTGCTCTACCAACCGAGCTATCC
CGACCGTT
Done.