Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003073.1 Corchorus olitorius cultivar O-4 contig03078, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 608

Length: 1014
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.35


Found at i:418 original size:23 final size:22

Alignment explanation


    Indices: 392--442  Score: 75
    Period size: 22  Copynumber: 2.3  Consensus size: 22

        382 ATTCAAAAGG

                                   
        392 TTCTTGACAGCTTACAATAAGTT
          1 TTCTT-ACAGCTTACAATAAGTT

                  * *             
        415 TTCTTATATCTTACAATAAGTT
          1 TTCTTACAGCTTACAATAAGTT

                  
        437 TTCTTA
          1 TTCTTA

        443 TATATATGCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  22   21  0.81
  23    5  0.19

ACGTcount: A:0.29, C:0.16, G:0.08, T:0.47


Consensus pattern (22 bp):   
TTCTTACAGCTTACAATAAGTT

Found at i:428 original size:22 final size:22

Alignment explanation


    Indices: 402--445  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        392 TTCTTGACAG

                                  
        402 CTTACAATAAGTTTTCTTATAT
          1 CTTACAATAAGTTTTCTTATAT

                                  
        424 CTTACAATAAGTTTTCTTATAT
          1 CTTACAATAAGTTTTCTTATAT

        446 ATATGCTGTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.32, C:0.14, G:0.05, T:0.50


Consensus pattern (22 bp):   
CTTACAATAAGTTTTCTTATAT

Found at i:542 original size:49 final size:49

Alignment explanation


    Indices: 486--583  Score: 196
    Period size: 49  Copynumber: 2.0  Consensus size: 49

        476 CTTAGCCTTT

                                                             
        486 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA
          1 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA

                                                             
        535 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA
          1 TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA

        584 AACCTATTCC


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  49   49  1.00

ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41


Consensus pattern (49 bp):   
TTTTATTCAATTCAATTAGATGTTAATGTAAATGAACCATAACTATGTA
Done.