Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003079.1 Corchorus olitorius cultivar O-4 contig03084, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2093
ACGTcount: A:0.14, C:0.31, G:0.36, T:0.19


Found at i:2070 original size:16 final size:16

Alignment explanation


    Indices: 2039--2071  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

       2029 GCGCGGCAGC

                            
       2039 CTGGCTGCAGGCGCGG
          1 CTGGCTGCAGGCGCGG

                             
       2055 CTGGCCTGCAGG-GCGG
          1 CTGG-CTGCAGGCGCGG

             
       2071 C
          1 C

       2072 CAGTTCGGCC


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  16    9  0.56
  17    7  0.44

ACGTcount: A:0.06, C:0.33, G:0.48, T:0.12


Consensus pattern (16 bp):   
CTGGCTGCAGGCGCGG
Done.