Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003133.1 Corchorus olitorius cultivar O-4 contig03138, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1290
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32


Found at i:1271 original size:21 final size:21

Alignment explanation


    Indices: 1247--1286  Score: 71
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       1237 ATGCATATGG

                                 
       1247 ATTTTGTGCCACTTTATGTAA
          1 ATTTTGTGCCACTTTATGTAA

                      *        
       1268 ATTTTGTGCCCCTTTATGT
          1 ATTTTGTGCCACTTTATGT

       1287 GATT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.17, C:0.17, G:0.15, T:0.50


Consensus pattern (21 bp):   
ATTTTGTGCCACTTTATGTAA
Done.