Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003143.1 Corchorus olitorius cultivar O-4 contig03148, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2386
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26


Found at i:2270 original size:19 final size:20

Alignment explanation


    Indices: 2246--2288  Score: 70
    Period size: 20  Copynumber: 2.2  Consensus size: 20

       2236 TTTGTTCATA

                                
       2246 AATATATTG-TTTTTCTAAT
          1 AATATATTGTTTTTTCTAAT

                              * 
       2265 AATATATTGTTTTTTCTATT
          1 AATATATTGTTTTTTCTAAT

                
       2285 AATA
          1 AATA

       2289 GAGTACTATA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  19    9  0.41
  20   13  0.59

ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58


Consensus pattern (20 bp):   
AATATATTGTTTTTTCTAAT

Done.