Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003164.1 Corchorus olitorius cultivar O-4 contig03169, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 649

Length: 1083
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:768 original size:22 final size:22

Alignment explanation


    Indices: 740--785  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        730 TTACCACCCC

                                  
        740 ATAAGAAGCGGTTATTCATACT
          1 ATAAGAAGCGGTTATTCATACT

                                  
        762 ATAAGAAGCGGTTATTCATACT
          1 ATAAGAAGCGGTTATTCATACT

              
        784 AT
          1 AT

        786 CTATAGCATT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33


Consensus pattern (22 bp):   
ATAAGAAGCGGTTATTCATACT
Done.