Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003189.1 Corchorus olitorius cultivar O-4 contig03195, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1930
ACGTcount: A:0.19, C:0.30, G:0.26, T:0.25


Found at i:91 original size:7 final size:7

Alignment explanation


    Indices: 79--117  Score: 78
    Period size: 7  Copynumber: 5.6  Consensus size: 7

         69 CTTTCGCCCG

                   
         79 TCTTCCT
          1 TCTTCCT

                   
         86 TCTTCCT
          1 TCTTCCT

                   
         93 TCTTCCT
          1 TCTTCCT

                   
        100 TCTTCCT
          1 TCTTCCT

                   
        107 TCTTCCT
          1 TCTTCCT

                
        114 TCTT
          1 TCTT

        118 TCTACGCGCG


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   32  1.00

ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59


Consensus pattern (7 bp):   
TCTTCCT

Found at i:372 original size:16 final size:16

Alignment explanation


    Indices: 351--383  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        341 CGGTTCTGCA

                             
        351 ACTTCCGTAC-TCCCGT
          1 ACTTCCG-ACTTCCCGT

                            
        367 ACTTCCGACTTCCCGT
          1 ACTTCCGACTTCCCGT

             
        383 A
          1 A

        384 TCCCTGCAAG


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  15    2  0.12
  16   14  0.88

ACGTcount: A:0.15, C:0.42, G:0.12, T:0.30


Consensus pattern (16 bp):   
ACTTCCGACTTCCCGT
Done.