Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003193.1 Corchorus olitorius cultivar O-4 contig03199, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1157
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.30


Found at i:944 original size:18 final size:18

Alignment explanation


    Indices: 921--985  Score: 112
    Period size: 18  Copynumber: 3.6  Consensus size: 18

        911 CGATCGATAT

                              
        921 CGTCACTATCATCAATAG
          1 CGTCACTATCATCAATAG

                              
        939 CGTCACTATCATCAATAG
          1 CGTCACTATCATCAATAG

                    *        *
        957 CGTCACTAGCATCAATAT
          1 CGTCACTATCATCAATAG

                       
        975 CGTCACTATCA
          1 CGTCACTATCA

        986 CTATCATCCA


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   44  1.00

ACGTcount: A:0.32, C:0.29, G:0.11, T:0.28


Consensus pattern (18 bp):   
CGTCACTATCATCAATAG

Found at i:984 original size:9 final size:9

Alignment explanation


    Indices: 918--984  Score: 53
    Period size: 9  Copynumber: 7.4  Consensus size: 9

        908 TCACGATCGA

                     
        918 TATCGTCAC
          1 TATCGTCAC

                *   *
        927 TATCATCAA
          1 TATCGTCAC

              *      
        936 TAGCGTCAC
          1 TATCGTCAC

                *   *
        945 TATCATCAA
          1 TATCGTCAC

              *      
        954 TAGCGTCAC
          1 TATCGTCAC

              * *   *
        963 TAGCATCAA
          1 TATCGTCAC

                     
        972 TATCGTCAC
          1 TATCGTCAC

                
        981 TATC
          1 TATC

        985 ACTATCATCC


Statistics
Matches: 42,  Mismatches: 16, Indels: 0
        0.72            0.28        0.00

Matches are distributed among these distances:
   9   42  1.00

ACGTcount: A:0.31, C:0.28, G:0.10, T:0.30


Consensus pattern (9 bp):   
TATCGTCAC
Done.