Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003205.1 Corchorus olitorius cultivar O-4 contig03211, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32


Found at i:1041 original size:29 final size:29

Alignment explanation


    Indices: 999--1056  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

        989 CTTTGTACGT

                                         
        999 AATTATAGAGATTGACTACACACTGATTA
          1 AATTATAGAGATTGACTACACACTGATTA

                                         
       1028 AATTATAGAGATTGACTACACACTGATTA
          1 AATTATAGAGATTGACTACACACTGATTA

       1057 GGCTATTTCC


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31


Consensus pattern (29 bp):   
AATTATAGAGATTGACTACACACTGATTA
Done.