Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000321.1 Corchorus olitorius cultivar O-4 contig00321, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28


Found at i:605 original size:13 final size:14

Alignment explanation


    Indices: 568--606  Score: 53
    Period size: 14  Copynumber: 2.9  Consensus size: 14

        558 GCTTTTAAAG

                 *        
        568 GATTTTTCAAAAAT
          1 GATTTCTCAAAAAT

                          
        582 GATTTCTCAAAAAT
          1 GATTTCTCAAAAAT

             *          
        596 GGTTTC-CAAAA
          1 GATTTCTCAAAA

        607 TTTGTTTTCA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  13    5  0.22
  14   18  0.78

ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36


Consensus pattern (14 bp):   
GATTTCTCAAAAAT
Done.