Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003213.1 Corchorus olitorius cultivar O-4 contig03219, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2261
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28


Found at i:2231 original size:33 final size:33

Alignment explanation


    Indices: 2181--2261  Score: 101
    Period size: 33  Copynumber: 2.5  Consensus size: 33

       2171 CCTGAGACTT

                               *           *  
       2181 TACATC-TTCAGCCTTATTTTGCACCTGGGATGC
          1 TACATCATT-AGCCTTATTCTGCACCTGGGAAGC

                        *           *        
       2214 TACATCATTAGCTTTATTCTGCACTTGGGAAGC
          1 TACATCATTAGCCTTATTCTGCACCTGGGAAGC

               *           
       2247 TACGTCATTAGCCTT
          1 TACATCATTAGCCTT


Statistics
Matches: 41,  Mismatches: 6, Indels: 2
        0.84            0.12        0.04

Matches are distributed among these distances:
  33   39  0.95
  34    2  0.05

ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37


Consensus pattern (33 bp):   
TACATCATTAGCCTTATTCTGCACCTGGGAAGC
Done.