Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003216.1 Corchorus olitorius cultivar O-4 contig03222, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 774

Length: 1290
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:965 original size:21 final size:21

Alignment explanation


    Indices: 939--1002  Score: 128
    Period size: 21  Copynumber: 3.0  Consensus size: 21

        929 NCTCAAAACG

                                 
        939 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
        960 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

                                 
        981 GAATCTATTCCAAACATATAT
          1 GAATCTATTCCAAACATATAT

             
       1002 G
          1 G

       1003 CCATGGTTCC


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   43  1.00

ACGTcount: A:0.42, C:0.19, G:0.06, T:0.33


Consensus pattern (21 bp):   
GAATCTATTCCAAACATATAT
Done.