Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003218.1 Corchorus olitorius cultivar O-4 contig03224, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1841
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18


Found at i:306 original size:12 final size:12

Alignment explanation


    Indices: 289--314  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        279 GCACAATGGC

                        
        289 AAAGCCGATCAG
          1 AAAGCCGATCAG

                        
        301 AAAGCCGATCAG
          1 AAAGCCGATCAG

              
        313 AA
          1 AA

        315 TGGTGAGATA


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.46, C:0.23, G:0.23, T:0.08


Consensus pattern (12 bp):   
AAAGCCGATCAG
Done.