Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003242.1 Corchorus olitorius cultivar O-4 contig03248, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 939

Length: 1566
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1436 original size:22 final size:22

Alignment explanation


    Indices: 1411--1463  Score: 79
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       1401 CATGGCACGG

                            *     
       1411 CACGACCCACGTGCCGGCACAA
          1 CACGACCCACGTGCCGACACAA

                              *  *
       1433 CACGACCCACGTGCCGACGCAT
          1 CACGACCCACGTGCCGACACAA

                     
       1455 CACGACCCA
          1 CACGACCCA

       1464 TTTTTAATGT


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  22   28  1.00

ACGTcount: A:0.26, C:0.47, G:0.21, T:0.06


Consensus pattern (22 bp):   
CACGACCCACGTGCCGACACAA
Done.