Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000326.1 Corchorus olitorius cultivar O-4 contig00326, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 641

Length: 1069
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.41


Found at i:780 original size:28 final size:28

Alignment explanation


    Indices: 748--804  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        738 GTTGCGAATA

                                        
        748 TCAGCTGCATGCAGGAGATGTTGAGTTC
          1 TCAGCTGCATGCAGGAGATGTTGAGTTC

                                        
        776 TCAGCTGCATGCAGGAGATGTTGAGTTC
          1 TCAGCTGCATGCAGGAGATGTTGAGTTC

             
        804 T
          1 T

        805 ATGTAAATTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.21, C:0.18, G:0.32, T:0.30


Consensus pattern (28 bp):   
TCAGCTGCATGCAGGAGATGTTGAGTTC
Done.