Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003260.1 Corchorus olitorius cultivar O-4 contig03266, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 640

Length: 1068
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24


Found at i:50 original size:13 final size:13

Alignment explanation


    Indices: 32--58  Score: 54
    Period size: 13  Copynumber: 2.1  Consensus size: 13

         22 GTCACCGGAT

                         
         32 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

                         
         45 TCCTTCAATTCAA
          1 TCCTTCAATTCAA

             
         58 T
          1 T

         59 ATGTATGGTG


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   14  1.00

ACGTcount: A:0.30, C:0.30, G:0.00, T:0.41


Consensus pattern (13 bp):   
TCCTTCAATTCAA
Done.