Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003280.1 Corchorus olitorius cultivar O-4 contig03286, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 987

Length: 1645
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29


Found at i:87 original size:27 final size:27

Alignment explanation


    Indices: 57--127  Score: 124
    Period size: 27  Copynumber: 2.6  Consensus size: 27

         47 AGCTTTAGCA

                       *               
         57 GCTGTAGAATCAGTAGTAGGAGCAACT
          1 GCTGTAGAATCTGTAGTAGGAGCAACT

                                       
         84 GCTGTAGAATCTGTAGTAGGAGCAACT
          1 GCTGTAGAATCTGTAGTAGGAGCAACT

              *              
        111 GCAGTAGAATCTGTAGT
          1 GCTGTAGAATCTGTAGT

        128 TACAGCTGTA


Statistics
Matches: 42,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  27   42  1.00

ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25


Consensus pattern (27 bp):   
GCTGTAGAATCTGTAGTAGGAGCAACT

Done.