Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000329.1 Corchorus olitorius cultivar O-4 contig00329, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1910
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.34

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:15 original size:2 final size:2

Alignment explanation


    Indices: 9--80  Score: 144
    Period size: 2  Copynumber: 36.0  Consensus size: 2

          1 TCTCNNAN

                                                                          
          9 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                                                        
         51 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

         81 CTTAAGCCCA


Statistics
Matches: 70,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   70  1.00

ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50


Consensus pattern (2 bp):   
TC

Done.