Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003297.1 Corchorus olitorius cultivar O-4 contig03303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 849

Length: 1415
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42


Found at i:669 original size:12 final size:12

Alignment explanation


    Indices: 654--678  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        644 TCCACCTTCG

                        
        654 TGGTCTTCATCT
          1 TGGTCTTCATCT

                        
        666 TGGTCTTCATCT
          1 TGGTCTTCATCT

             
        678 T
          1 T

        679 CAGAACCTCC


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.24, G:0.16, T:0.52


Consensus pattern (12 bp):   
TGGTCTTCATCT
Done.