Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000033.1 Corchorus olitorius cultivar O-4 contig00033, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2693
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27


Found at i:2054 original size:47 final size:47

Alignment explanation


    Indices: 2001--2096  Score: 192
    Period size: 47  Copynumber: 2.0  Consensus size: 47

       1991 GGTAAATTTT

                                                           
       2001 TAACCTCAGATAATTTGCATGACACTTCTGCCATGCAAGATTTTGGA
          1 TAACCTCAGATAATTTGCATGACACTTCTGCCATGCAAGATTTTGGA

                                                           
       2048 TAACCTCAGATAATTTGCATGACACTTCTGCCATGCAAGATTTTGGA
          1 TAACCTCAGATAATTTGCATGACACTTCTGCCATGCAAGATTTTGGA

              
       2095 TA
          1 TA

       2097 TCAGCCTATA


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  47   49  1.00

ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32


Consensus pattern (47 bp):   
TAACCTCAGATAATTTGCATGACACTTCTGCCATGCAAGATTTTGGA
Done.