Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000331.1 Corchorus olitorius cultivar O-4 contig00331, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 626

Length: 1044
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:199 original size:31 final size:31

Alignment explanation


    Indices: 148--234  Score: 111
    Period size: 31  Copynumber: 2.7  Consensus size: 31

        138 ACTTTTTGAA

                                             
        148 ACACATGGTCACTTTTTTGGTACACATGGCGTG
          1 ACACAT-GTCAC-TTTTTGGTACACATGGCGTG

             * **                          
        181 ATATGTGTCACTTTTTGGTACACATGGCGTG
          1 ACACATGTCACTTTTTGGTACACATGGCGTG

            *        *             
        212 CCACATGTCGCTTTTTGGTACAC
          1 ACACATGTCACTTTTTGGTACAC

        235 GTAGCATGTC


Statistics
Matches: 46,  Mismatches: 8, Indels: 2
        0.82            0.14        0.04

Matches are distributed among these distances:
  31   38  0.83
  32    5  0.11
  33    3  0.07

ACGTcount: A:0.20, C:0.22, G:0.23, T:0.36


Consensus pattern (31 bp):   
ACACATGTCACTTTTTGGTACACATGGCGTG
Done.