Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003311.1 Corchorus olitorius cultivar O-4 contig03317, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1970
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18


Found at i:771 original size:21 final size:21

Alignment explanation


    Indices: 732--771  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        722 ACACCGATTT

                          *      
        732 ACTTCGCATACAAAGTAAAAC
          1 ACTTCGCATACAAACTAAAAC

                     * *       
        753 ACTTCGCATGCGAACTAAA
          1 ACTTCGCATACAAACTAAA

        772 TCAACGTCAT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.42, C:0.25, G:0.12, T:0.20


Consensus pattern (21 bp):   
ACTTCGCATACAAACTAAAAC
Done.