Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003312.1 Corchorus olitorius cultivar O-4 contig03319, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:906 original size:13 final size:14

Alignment explanation


    Indices: 876--905  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        866 GTGCGTATCA

                          
        876 TTTGTTTTTTTCTT
          1 TTTGTTTTTTTCTT

                          
        890 TTTGTTTTTTTCTT
          1 TTTGTTTTTTTCTT

              
        904 TT
          1 TT

        906 GATGTGTTGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87


Consensus pattern (14 bp):   
TTTGTTTTTTTCTT

Found at i:1460 original size:1 final size:1

Alignment explanation


    Indices: 1454--1479  Score: 52
    Period size: 1  Copynumber: 26.0  Consensus size: 1

       1444 TGCCTTGTTT

                                      
       1454 AAAAAAAAAAAAAAAAAAAAAAAAAA
          1 AAAAAAAAAAAAAAAAAAAAAAAAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   1   25  1.00

ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00


Consensus pattern (1 bp):   
A

Done.