Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003326.1 Corchorus olitorius cultivar O-4 contig03333, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 668

Length: 1114
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29


Found at i:1057 original size:16 final size:16

Alignment explanation


    Indices: 1026--1060  Score: 52
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1016 AAGAAAGAGC

                       *    
       1026 AAATACGCTAATAAAT
          1 AAATACGCTAAGAAAT

                      *     
       1042 AAATACGCTAGGAAAT
          1 AAATACGCTAAGAAAT

               
       1058 AAA
          1 AAA

       1061 ATACCCGATA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.57, C:0.11, G:0.11, T:0.20


Consensus pattern (16 bp):   
AAATACGCTAAGAAAT
Done.