Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003333.1 Corchorus olitorius cultivar O-4 contig03340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.38


Found at i:805 original size:154 final size:153

Alignment explanation


    Indices: 537--1027  Score: 829
    Period size: 154  Copynumber: 3.2  Consensus size: 153

        527 ATTCGTATCA

                                        *                        *           
        537 GTGAGATTAGTCCACTGTGAAGTTTTTAACTCATTTGGAACACTTGTTATTTTGGGCCTATCGGG
          1 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCT-TCGGG

            *         *                 *                                    
        602 ACCCATTAGTGACGTTTTGAATCGTCTTTGATTTGGCAAACCTCAATGCTTTTGTTTCCATTGTT
         65 GCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTGTTTCCATTGTT

                                    
        667 TATGGCCTAACTATAATCATTTTG
        130 TATGGCCTAACTATAATCATTTTG

                                                                             
        691 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTCCGGG
          1 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTT-CGGG

             *         *              *            *    *                    
        756 GGCCATTAGTTTCGTTTTGAATCGTCATCGATTTGGCAACCCTCGATGCTTTTGTTTCCATTGTT
         65 GCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTGTTTCCATTGTT

                                    
        821 TATGGCCTAACTATAATCATTTTG
        130 TATGGCCTAACTATAATCATTTTG

                                                                             
        845 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGG
          1 GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCC-TTCGGG

                       *                        *                *    *      
        910 GCCCATTAGTTCCGTTTTGAATCGTCTTCGATTTGGTAAACCTCAATGCTTTTCTTTCGATTGTT
         65 GCCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTGTTTCCATTGTT

                                    
        975 TATGGCCTAACTATAATCATTTTG
        130 TATGGCCTAACTATAATCATTTTG

                                         
        999 GTGAGATTAGTCCACTGTGAAGTTTTTAG
          1 GTGAGATTAGTCCACTGTGAAGTTTTTAG


Statistics
Matches: 317,  Mismatches: 18, Indels: 4
        0.94            0.05        0.01

Matches are distributed among these distances:
 153    1  0.00
 154  314  0.99
 155    2  0.01

ACGTcount: A:0.21, C:0.18, G:0.20, T:0.41


Consensus pattern (153 bp):   
GTGAGATTAGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTCGGGG
CCCATTAGTTACGTTTTGAATCGTCTTCGATTTGGCAAACCTCAATGCTTTTGTTTCCATTGTTT
ATGGCCTAACTATAATCATTTTG
Done.