Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003335.1 Corchorus olitorius cultivar O-4 contig03342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1037
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33


Found at i:370 original size:31 final size:31

Alignment explanation


    Indices: 335--407  Score: 137
    Period size: 31  Copynumber: 2.4  Consensus size: 31

        325 GAAAGGGCTA

                                    *      
        335 AATTGTCCCAAAATTGAGAATCAGGGGACTT
          1 AATTGTCCCAAAATTGAGAATCAGAGGACTT

                                           
        366 AATTGTCCCAAAATTGAGAATCAGAGGACTT
          1 AATTGTCCCAAAATTGAGAATCAGAGGACTT

                       
        397 AATTGTCCCAA
          1 AATTGTCCCAA

        408 TTGAAATTCA


Statistics
Matches: 41,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  31   41  1.00

ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26


Consensus pattern (31 bp):   
AATTGTCCCAAAATTGAGAATCAGAGGACTT
Done.