Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003343.1 Corchorus olitorius cultivar O-4 contig03350, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 655

Length: 1092
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30


Found at i:284 original size:17 final size:19

Alignment explanation


    Indices: 223--279  Score: 114
    Period size: 19  Copynumber: 3.0  Consensus size: 19

        213 TTGAATCCCA

                               
        223 ATGAAAAAAATAGATCAAT
          1 ATGAAAAAAATAGATCAAT

                               
        242 ATGAAAAAAATAGATCAAT
          1 ATGAAAAAAATAGATCAAT

                               
        261 ATGAAAAAAATAGATCAAT
          1 ATGAAAAAAATAGATCAAT

        280 GAAAAGTTTG


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   38  1.00

ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21


Consensus pattern (19 bp):   
ATGAAAAAAATAGATCAAT
Done.