Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003344.1 Corchorus olitorius cultivar O-4 contig03351, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 659

Length: 1099
ACGTcount: A:0.36, C:0.19, G:0.22, T:0.23


Found at i:1077 original size:27 final size:27

Alignment explanation


    Indices: 1039--1093  Score: 110
    Period size: 27  Copynumber: 2.0  Consensus size: 27

       1029 CTTGACCCGA

                                       
       1039 CAAAGAAAGAAAGGAACGAACGAGATT
          1 CAAAGAAAGAAAGGAACGAACGAGATT

                                       
       1066 CAAAGAAAGAAAGGAACGAACGAGATT
          1 CAAAGAAAGAAAGGAACGAACGAGATT

             
       1093 C
          1 C

       1094 GCACTG


Statistics
Matches: 28,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.55, C:0.13, G:0.25, T:0.07


Consensus pattern (27 bp):   
CAAAGAAAGAAAGGAACGAACGAGATT
Done.