Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003345.1 Corchorus olitorius cultivar O-4 contig03352, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 857

Length: 1429
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26


Found at i:1269 original size:19 final size:19

Alignment explanation


    Indices: 1245--1284  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       1235 CAGCGGGCGT

                               
       1245 AAGACTAGCTCTGTCTTGA
          1 AAGACTAGCTCTGTCTTGA

                               
       1264 AAGACTAGCTCTGTCTTGA
          1 AAGACTAGCTCTGTCTTGA

              
       1283 AA
          1 AA

       1285 AGCGGGAATC


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Consensus pattern (19 bp):   
AAGACTAGCTCTGTCTTGA
Done.