Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000335.1 Corchorus olitorius cultivar O-4 contig00335, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1759
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34


Found at i:1478 original size:36 final size:36

Alignment explanation


    Indices: 1431--1513  Score: 166
    Period size: 36  Copynumber: 2.3  Consensus size: 36

       1421 AACCGAAAAT

                                                
       1431 GGGAACCTTCCCTTTCTTAAAAAATGAAAATAAGGC
          1 GGGAACCTTCCCTTTCTTAAAAAATGAAAATAAGGC

                                                
       1467 GGGAACCTTCCCTTTCTTAAAAAATGAAAATAAGGC
          1 GGGAACCTTCCCTTTCTTAAAAAATGAAAATAAGGC

                       
       1503 GGGAACCTTCC
          1 GGGAACCTTCC

       1514 TTTTGAAAAC


Statistics
Matches: 47,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   47  1.00

ACGTcount: A:0.36, C:0.22, G:0.18, T:0.24


Consensus pattern (36 bp):   
GGGAACCTTCCCTTTCTTAAAAAATGAAAATAAGGC
Done.