Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003383.1 Corchorus olitorius cultivar O-4 contig03390, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1687
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.17


Found at i:792 original size:59 final size:59

Alignment explanation


    Indices: 688--808  Score: 188
    Period size: 59  Copynumber: 2.1  Consensus size: 59

        678 GTAATCTCCC

                                               *                       
        688 TGGTGCGCGTTAACGCGCACCCTACAGGGTTTATGGCCCTGGCGTACCTGCTGCGGTTT
          1 TGGTGCGCGTTAACGCGCACCCTACAGGGTTTATGACCCTGGCGTACCTGCTGCGGTTT

                              *             * *     *            *     
        747 TGGTGCGCGTTAACGCGCCCCCTACAGGGTTTGTTACCCTTGCGTACCTGCTGTGGTTT
          1 TGGTGCGCGTTAACGCGCACCCTACAGGGTTTATGACCCTGGCGTACCTGCTGCGGTTT

               
        806 TGG
          1 TGG

        809 CGTACGCGCC


Statistics
Matches: 56,  Mismatches: 6, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  59   56  1.00

ACGTcount: A:0.11, C:0.28, G:0.31, T:0.30


Consensus pattern (59 bp):   
TGGTGCGCGTTAACGCGCACCCTACAGGGTTTATGACCCTGGCGTACCTGCTGCGGTTT
Done.