Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003388.1 Corchorus olitorius cultivar O-4 contig03395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1190
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32


Found at i:1135 original size:31 final size:34

Alignment explanation


    Indices: 1093--1160  Score: 106
    Period size: 33  Copynumber: 2.1  Consensus size: 34

       1083 TTATGATTAG

                                              
       1093 TTTTTTCGAGGTAAT-CAT-TATGATTAGTTTAA
          1 TTTTTTCGAGGTAATCCATATATGATTAGTTTAA

                             *                
       1125 TTTTTT-GAGGTAATCCTTATATGATTAGTTTAA
          1 TTTTTTCGAGGTAATCCATATATGATTAGTTTAA

               
       1158 TTT
          1 TTT

       1161 AAGTAAATAG


Statistics
Matches: 33,  Mismatches: 1, Indels: 3
        0.89            0.03        0.08

Matches are distributed among these distances:
  31    8  0.24
  32    8  0.24
  33   17  0.52

ACGTcount: A:0.26, C:0.06, G:0.15, T:0.53


Consensus pattern (34 bp):   
TTTTTTCGAGGTAATCCATATATGATTAGTTTAA

Done.