Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000034.1 Corchorus olitorius cultivar O-4 contig00034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 858

Length: 1430
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28


Found at i:53 original size:15 final size:16

Alignment explanation


    Indices: 35--72  Score: 60
    Period size: 15  Copynumber: 2.4  Consensus size: 16

         25 AGGTTGACAA

                    *       
         35 AAAACAATTAAAC-AG
          1 AAAACAATGAAACTAG

                            
         50 AAAACAATGAAACTAG
          1 AAAACAATGAAACTAG

                   
         66 AAAACAA
          1 AAAACAA

         73 AGCAAAGTAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  15   12  0.57
  16    9  0.43

ACGTcount: A:0.68, C:0.13, G:0.08, T:0.11


Consensus pattern (16 bp):   
AAAACAATGAAACTAG

Done.