Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003403.1 Corchorus olitorius cultivar O-4 contig03410, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 844

Length: 1407
ACGTcount: A:0.27, C:0.26, G:0.25, T:0.22


Found at i:255 original size:21 final size:21

Alignment explanation


    Indices: 225--265  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        215 TGTACCTGGT

                 *               
        225 GGCGGTGGTGGCGGAGGCGGG
          1 GGCGGCGGTGGCGGAGGCGGG

                       *        
        246 GGCGGCGGTGGTGGAGGCGG
          1 GGCGGCGGTGGCGGAGGCGG

        266 TGCAGCAGCA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.05, C:0.15, G:0.71, T:0.10


Consensus pattern (21 bp):   
GGCGGCGGTGGCGGAGGCGGG
Done.