Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003418.1 Corchorus olitorius cultivar O-4 contig03425, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1207
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.31


Found at i:35 original size:18 final size:18

Alignment explanation


    Indices: 9--77  Score: 111
    Period size: 18  Copynumber: 3.8  Consensus size: 18

          1 GATGATAG

                              
          9 TGATAGTGACGATATTGA
          1 TGATAGTGACGATATTGA

              *        *      
         27 TGCTAGTGACGCTATTGA
          1 TGATAGTGACGATATTGA

                       *      
         45 TGATAGTGACGCTATTGA
          1 TGATAGTGACGATATTGA

                           
         63 TGATAGTGACGATAT
          1 TGATAGTGACGATAT

         78 CGATCGTGAC


Statistics
Matches: 47,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  18   47  1.00

ACGTcount: A:0.29, C:0.10, G:0.28, T:0.33


Consensus pattern (18 bp):   
TGATAGTGACGATATTGA

Found at i:40 original size:9 final size:9

Alignment explanation


    Indices: 10--76  Score: 53
    Period size: 9  Copynumber: 7.4  Consensus size: 9

          1 GATGATAGT

                     
         10 GATAGTGAC
          1 GATAGTGAC

                *   *
         19 GATATTGAT
          1 GATAGTGAC

             *       
         28 GCTAGTGAC
          1 GATAGTGAC

             *  *   *
         37 GCTATTGAT
          1 GATAGTGAC

                     
         46 GATAGTGAC
          1 GATAGTGAC

             *  *   *
         55 GCTATTGAT
          1 GATAGTGAC

                     
         64 GATAGTGAC
          1 GATAGTGAC

                
         73 GATA
          1 GATA

         77 TCGATCGTGA


Statistics
Matches: 42,  Mismatches: 16, Indels: 0
        0.72            0.28        0.00

Matches are distributed among these distances:
   9   42  1.00

ACGTcount: A:0.30, C:0.10, G:0.28, T:0.31


Consensus pattern (9 bp):   
GATAGTGAC
Done.