Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000342.1 Corchorus olitorius cultivar O-4 contig00342, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 639

Length: 1066
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.37


Found at i:330 original size:12 final size:12

Alignment explanation


    Indices: 313--338  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        303 AATTTCTAAC

                        
        313 TTTCTGTAATGT
          1 TTTCTGTAATGT

                        
        325 TTTCTGTAATGT
          1 TTTCTGTAATGT

              
        337 TT
          1 TT

        339 AGTTGTTTAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62


Consensus pattern (12 bp):   
TTTCTGTAATGT
Done.