Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003426.1 Corchorus olitorius cultivar O-4 contig03433, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 724

Length: 1208
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26


Found at i:1133 original size:155 final size:154

Alignment explanation


    Indices: 804--1207  Score: 612
    Period size: 155  Copynumber: 2.6  Consensus size: 154

        794 GAATAAAGCC

                      *                                                      
        804 CAAAATG-GCCAAAAACTTCACATTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC
          1 CAAAATGAGCTAAAAACTTCACATTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC

                                     *     *                      *          
        868 AATGGAAAGAAAATCATTAAGGGTTGCCAAATCGAAGACGAATCAAAACGGAACTAATGGGCCCC
         66 AATGGAAAGAAAATCATTAAGGGTTACCAAAGCGAAGACGAATCAAAACGGAACAAATGGGCCCC

                                    
        933 GATAGGCCCAAAATAACAAGTGCT
        131 GATAGGCCCAAAATAACAAGTGCT

                                   *                                         
        957 CAAAATGAGCTAAAAACTTCACAGTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC
          1 CAAAATGAGCTAAAAACTTCACATTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC

                        *                          *  *        **            
       1022 AATGGAAAGAAAGTCATTAAGGGGTTACCAAAGCGAAGATGATTCAAAACGTCACAAATGGGCCC
         66 AATGGAAAGAAAATCATTAA-GGGTTACCAAAGCGAAGACGAATCAAAACGGAACAAATGGGCCC

                    *              * 
       1087 CGATAGGCTCAAAATAACAAGTGTT
        130 CGATAGGCCCAAAATAACAAGTGCT

             *                          *        *                         * 
       1112 CCAAATGAGCTAAAAACTTCACATTGGATTAATCTCAACAAAATGATTATAGTTAGGCCATAATC
          1 CAAAATGAGCTAAAAACTTCACATTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC

                    *    *    *      *     
       1177 AATGGAAATAAAAGCATTGAGGGTTGCCAAA
         66 AATGGAAAGAAAATCATTAAGGGTTACCAAA

       1208 T


Statistics
Matches: 227,  Mismatches: 22, Indels: 3
        0.90            0.09        0.01

Matches are distributed among these distances:
 153    7  0.03
 154   84  0.37
 155  136  0.60

ACGTcount: A:0.42, C:0.18, G:0.18, T:0.21


Consensus pattern (154 bp):   
CAAAATGAGCTAAAAACTTCACATTGGACTAATCTCACCAAAATGATTATAGTTAGGCCATAAAC
AATGGAAAGAAAATCATTAAGGGTTACCAAAGCGAAGACGAATCAAAACGGAACAAATGGGCCCC
GATAGGCCCAAAATAACAAGTGCT
Done.