Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000343.1 Corchorus olitorius cultivar O-4 contig00343, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1691
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37


Found at i:162 original size:14 final size:14

Alignment explanation


    Indices: 143--177  Score: 61
    Period size: 14  Copynumber: 2.5  Consensus size: 14

        133 AATCATATAT

                          
        143 GTTGGATTAGAATA
          1 GTTGGATTAGAATA

                          
        157 GTTGGATTAGAATA
          1 GTTGGATTAGAATA

              *    
        171 GTAGGAT
          1 GTTGGAT

        178 CTCTGGTGGC


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   20  1.00

ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34


Consensus pattern (14 bp):   
GTTGGATTAGAATA
Done.