Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01003432.1 Corchorus olitorius cultivar O-4 contig03439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 804

Length: 1341
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--52  Score: 95
    Period size: 2  Copynumber: 26.0  Consensus size: 2

                                                                   *      
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TT TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                          
         43 TC TC TC TC TC
          1 TC TC TC TC TC

         53 CTTCCCTTTT


Statistics
Matches: 48,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   48  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.