Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01000344.1 Corchorus olitorius cultivar O-4 contig00344, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9096
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35


Found at i:6476 original size:15 final size:14

Alignment explanation


    Indices: 6456--6485  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       6446 CACCGCCAAG

                           
       6456 AAAAAAGAAAAAGAA
          1 AAAAAAG-AAAAGAA

                          
       6471 AAAAAAGAAAAGAA
          1 AAAAAAGAAAAGAA

             
       6485 A
          1 A

       6486 GAATGAGAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    8  0.53
  15    7  0.47

ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00


Consensus pattern (14 bp):   
AAAAAAGAAAAGAA
Done.